PyLorentz
stable
Contents:
PyLorentz Features and Code
Getting Started with the GUI
References
Support, License, How to cite, and Acknowledgements
PyLorentz
Docs
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Index
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
activate_spinner() (in module PyLorentz_GUI)
add_vectors() (in module util)
adjust_image() (in module util)
align (module)
apply_buj_trasf2stack() (in module align)
apply_crop_to_stack() (in module util)
apply_rot_transl() (in module util)
apply_transform() (in module align)
array_resize() (in module util)
axes (TIE_params.TIE_params attribute)
B
BackPropagateWave() (microscopes.Microscope method)
Bloch() (in module sim_helper)
bUnwarp_align() (in module align)
byte_data (util.FileImage attribute)
(util.Stack attribute)
C
Ca (microscopes.Microscope attribute)
Cc (microscopes.Microscope attribute)
change_inp_readonly_bg_color() (in module PyLorentz_GUI)
change_list_ind_color() (in module PyLorentz_GUI)
change_visibility() (in module PyLorentz_GUI)
check_image_flip() (in module align)
check_overwrite() (in module PyLorentz_GUI)
check_setup() (in module util)
close_all_windows_macro() (in module align)
color_im() (in module colorwheel)
colorwheel (module)
colorwheel_HSV() (in module colorwheel)
colorwheel_RGB() (in module colorwheel)
comp_phase (module)
concatenate_stacks_macro() (in module align)
convert_float_unint8() (in module util)
convert_to_bytes() (in module util)
create_mask() (in module util)
crop (TIE_params.TIE_params attribute)
crop_ims() (TIE_params.TIE_params method)
Cs (microscopes.Microscope attribute)
D
data_loc (TIE_params.TIE_params attribute)
deactivate_spinner() (in module PyLorentz_GUI)
DEF_BACKGROUND (gui_styling.WindowStyle attribute)
DEF_FONT (gui_styling.WindowStyle attribute)
def_spr (microscopes.Microscope attribute)
defaults() (in module PyLorentz_GUI)
defocus (microscopes.Microscope attribute)
defvals (TIE_params.TIE_params attribute)
delete_excess_images_macro() (in module align)
determine_window_focus() (in module align)
disable_elements() (in module PyLorentz_GUI)
dist() (in module TIE_helper)
draw_mask_points() (in module util)
draw_square_mask() (in module util)
E
E (microscopes.Microscope attribute)
element_keys() (in module gui_layout)
enable_elements() (in module PyLorentz_GUI)
erase_marks() (in module util)
erase_mask_data() (in module PyLorentz_GUI)
event_handler() (in module PyLorentz_GUI)
exp_sum() (in module comp_phase)
extract_SIFT_landmarks_macro() (in module align)
F
fijify_macro() (in module align)
file_choice_ly() (in module gui_layout)
file_loading() (in module PyLorentz_GUI)
FileImage (class in util)
FileObject (class in util)
flatten_order_list() (in module util)
flip (TIE_params.TIE_params attribute)
flipstack (TIE_params.TIE_params attribute)
flt_data (util.FileImage attribute)
(util.Stack attribute)
fonts (gui_styling.WindowStyle attribute)
format_macro() (in module align)
G
gamma (microscopes.Microscope attribute)
get_arrow_transform() (in module PyLorentz_GUI)
get_icon() (in module gui_styling)
get_mask_transform() (in module PyLorentz_GUI)
get_open_tab() (in module PyLorentz_GUI)
get_orientation() (in module PyLorentz_GUI)
get_shift_rot_macro() (in module align)
get_transformations() (in module PyLorentz_GUI)
getBFPImage() (microscopes.Microscope method)
getChiQ() (microscopes.Microscope method)
getDampEnv() (microscopes.Microscope method)
getImage() (microscopes.Microscope method)
getOptDef() (microscopes.Microscope method)
getSchDef() (microscopes.Microscope method)
getTransferFunction() (microscopes.Microscope method)
grab_fls_data() (in module util)
gui_layout (module)
gui_styling (module)
H
home_tab() (in module gui_layout)
I
imstack (TIE_params.TIE_params attribute)
infocus (TIE_params.TIE_params attribute)
init() (in module PyLorentz_GUI)
init_rec() (in module PyLorentz_GUI)
J
join() (in module util)
L
lam (microscopes.Microscope attribute)
lat_dims (util.FileImage attribute)
(util.Stack attribute)
Lillihook() (in module sim_helper)
linsupPhi() (in module comp_phase)
load_data() (in module TIE_helper)
load_data_GUI() (in module TIE_helper)
load_image() (in module util)
load_ovf() (in module sim_helper)
longitudinal_deriv (module)
ls_alignment() (in module align)
ls_macro() (in module align)
M
make_mask() (TIE_params.TIE_params method)
make_rgba() (in module util)
make_thickness_map() (in module sim_helper)
mansPhi() (in module comp_phase)
mask (TIE_params.TIE_params attribute)
menu_bar() (in module gui_layout)
metadata_change() (in module PyLorentz_GUI)
Microscope (class in microscopes)
microscopes (module)
N
Neel() (in module sim_helper)
no_mask (TIE_params.TIE_params attribute)
num_files (TIE_params.TIE_params attribute)
O
order_windows_for_selection_macro() (in module align)
output_ly() (in module gui_layout)
P
pad() (in module gui_styling)
path (util.FileImage attribute)
(util.FileObject attribute)
(util.Stack attribute)
phase_reconstruct() (in module TIE_reconstruct)
phi_a (microscopes.Microscope attribute)
polyfit_deriv() (in module longitudinal_deriv)
post_ls_alignment() (in module align)
post_single_ls_alignment() (in module align)
pre_bUnwarp_align() (in module align)
pre_Lap() (TIE_params.TIE_params method)
pre_ls_alignment() (in module align)
PropagateWave() (microscopes.Microscope method)
ptie_init_thread() (in module PyLorentz_GUI)
ptie_recon_thread() (in module PyLorentz_GUI)
ptie_save() (in module PyLorentz_GUI)
pull_image_files() (in module util)
PyLorentz_GUI (module)
Q
qi (TIE_params.TIE_params attribute)
R
read_fls() (in module util)
readlines() (in module PyLorentz_GUI)
rec_get_listbox_ind_from_key() (in module PyLorentz_GUI)
reconstruct_ovf() (in module sim_helper)
reconstruct_tab() (in module gui_layout)
redraw_graph() (in module PyLorentz_GUI)
represents_float() (in module util)
represents_int_above_0() (in module util)
reset() (in module PyLorentz_GUI)
retrieve_transform() (in module PyLorentz_GUI)
roi (TIE_params.TIE_params attribute)
rot_thickness_map() (in module sim_helper)
rotation (TIE_params.TIE_params attribute)
run_bUnwarp_align() (in module align)
run_GUI() (in module PyLorentz_GUI)
run_home_tab() (in module PyLorentz_GUI)
run_ls_align() (in module align)
run_reconstruct_tab() (in module PyLorentz_GUI)
run_save_window() (in module PyLorentz_GUI)
run_single_ls_align() (in module align)
S
save_results() (in module TIE_reconstruct)
save_stack_macro() (in module align)
save_window_ly() (in module gui_layout)
save_window_values() (in module PyLorentz_GUI)
scale (TIE_params.TIE_params attribute)
scale_stack() (in module TIE_helper)
select_region() (TIE_params.TIE_params method)
select_tifs() (in module TIE_helper)
set_crop_data() (in module PyLorentz_GUI)
set_default_bUnwarp() (in module align)
set_default_sift() (in module align)
set_pretty_focus() (in module PyLorentz_GUI)
set_scale() (TIE_params.TIE_params method)
set_shortnames() (in module align)
setAperture() (microscopes.Microscope method)
shape (TIE_params.TIE_params attribute)
shorten_name() (in module PyLorentz_GUI)
(util.FileObject method)
shortname (util.FileImage attribute)
(util.FileObject attribute)
(util.Stack attribute)
show_2D() (in module TIE_helper)
show_3D() (in module sim_helper)
show_im() (in module TIE_helper)
show_sims() (in module sim_helper)
show_stack() (in module TIE_helper)
sigma (microscopes.Microscope attribute)
sim_helper (module)
sim_images() (in module sim_helper)
single_ls_alignment() (in module align)
SITIE() (in module TIE_reconstruct)
skip_save() (in module PyLorentz_GUI)
slice_im() (in module util)
small_tab_size (gui_styling.WindowStyle attribute)
Stack (class in util)
stack_byte_data() (util.Stack method)
std_mansPhi() (in module sim_helper)
Struct (class in util)
styles() (gui_styling.WindowStyle method)
symmetrize() (in module TIE_reconstruct)
T
tab_size (gui_styling.WindowStyle attribute)
theta_c (microscopes.Microscope attribute)
TIE() (in module TIE_reconstruct)
TIE_helper (module)
TIE_params (class in TIE_params)
(module)
TIE_reconstruct (module)
toggle() (in module PyLorentz_GUI)
trim_and_reverse_single_stack() (in module align)
trim_and_reverse_stacks() (in module align)
U
uint8_data (util.FileImage attribute)
(util.Stack attribute)
update_mask_size() (in module PyLorentz_GUI)
update_rotxy() (in module PyLorentz_GUI)
update_slider() (in module PyLorentz_GUI)
update_values() (in module PyLorentz_GUI)
util (module)
V
vis_1_im() (in module util)
W
window_height (gui_styling.WindowStyle attribute)
window_ly() (in module gui_layout)
window_width (gui_styling.WindowStyle attribute)
WindowStyle (class in gui_styling)
write_ls_macro() (in module align)
write_single_ls_macro() (in module align)
X
x_size (util.FileImage attribute)
(util.Stack attribute)
x_transl (TIE_params.TIE_params attribute)
Y
y_size (util.FileImage attribute)
(util.Stack attribute)
y_transl (TIE_params.TIE_params attribute)
Z
z_size (util.FileImage attribute)
(util.Stack attribute)
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